Protein Info for A4249_RS04685 in Brevundimonas sp. GW460-12-10-14-LB2

Annotation: VTT domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 237 signal peptide" amino acids 1 to 37 (37 residues), see Phobius details transmembrane" amino acids 60 to 89 (30 residues), see Phobius details amino acids 94 to 113 (20 residues), see Phobius details amino acids 142 to 163 (22 residues), see Phobius details amino acids 172 to 192 (21 residues), see Phobius details amino acids 204 to 224 (21 residues), see Phobius details PF09335: SNARE_assoc" amino acids 78 to 192 (115 residues), 77 bits, see alignment E=9e-26

Best Hits

KEGG orthology group: None (inferred from 78% identity to bsb:Bresu_2301)

Predicted SEED Role

"Phospholipase D/Transphosphatidylase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A160HW62 at UniProt or InterPro

Protein Sequence (237 amino acids)

>A4249_RS04685 VTT domain-containing protein (Brevundimonas sp. GW460-12-10-14-LB2)
MRWIIDFLSNMEARRWRAVLATALLLGAMIALFAVGKSQLGLEAEGRLEDWLAGFRQGPW
GLVAAIVVFTISAFFGAPQFILIAACVVAFGPWFGFLYSWIATVVSAGVTYWLGRGPTAR
LLARHGGKTVGRLTRFVGKNAFYASFMIRNVPSAPFIVVNMAFGAARASFPGFLAGCALG
VLPKTALVAFFGGSFMTAVSGDGIWTSAILAGVALAWLALMLLVRELVKRREIARGD