Protein Info for A4249_RS04210 in Brevundimonas sp. GW460-12-10-14-LB2

Annotation: TMEM175 family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 213 transmembrane" amino acids 19 to 36 (18 residues), see Phobius details amino acids 56 to 74 (19 residues), see Phobius details amino acids 86 to 109 (24 residues), see Phobius details amino acids 122 to 144 (23 residues), see Phobius details amino acids 156 to 179 (24 residues), see Phobius details amino acids 185 to 205 (21 residues), see Phobius details PF06736: TMEM175" amino acids 18 to 105 (88 residues), 85.9 bits, see alignment E=1.1e-28

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A160HXW5 at UniProt or InterPro

Protein Sequence (213 amino acids)

>A4249_RS04210 TMEM175 family protein (Brevundimonas sp. GW460-12-10-14-LB2)
MTTTADLSPAKGDHSLERLLLFSDGVFAIAITLLAIELHVPEGWDGQWASLWAERWPMFS
AFALSFAIIGVFWNTHRRVFARMSGFSNGVMLFNMLALAGVVLMPFATTLLYEQPRNGEG
AWIYLSLVALIGVMHAGAYGWAAFVTDAIRPRPHWAVRATVVVTHALMPGLACALSFFLM
ARGVGLLAAVTALALGLLIAGRVWVGRRFGGAA