Protein Info for A4249_RS04060 in Brevundimonas sp. GW460-12-10-14-LB2

Annotation: ABC transporter ATP-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 303 PF00005: ABC_tran" amino acids 20 to 159 (140 residues), 102.8 bits, see alignment E=2.6e-33 PF13304: AAA_21" amino acids 130 to 192 (63 residues), 28.3 bits, see alignment E=1.7e-10

Best Hits

KEGG orthology group: None (inferred from 77% identity to bsb:Bresu_1538)

Predicted SEED Role

"ABC transporter, ATP-binding protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A160HYF7 at UniProt or InterPro

Protein Sequence (303 amino acids)

>A4249_RS04060 ABC transporter ATP-binding protein (Brevundimonas sp. GW460-12-10-14-LB2)
METVIDIRGLTKTYGTVKALDGLTLSIPRGGVYGILGPNGAGKSTLFRTLLGLIRPTEGE
ATVMGGRIGDPASMRRMGSMIETPRFPPFMTARQVLEWLARAHGGVSSAEIADWLQRVGL
TEAANRRVKGFSVGMLQRLGVAAALMTKPDLVILDEPTSGMDPPGIQEMRALIRSLADHD
GVTVILASHQLQEVQRVCDRVAIFNKGKVITEGRVSDLTASGERLRLSVTPLAKAMSVLG
ERATLEGDALVAAVPRSEAAAAIKALVEGGVDIEEARWIGADLEDVFMSETGWTGVQEQN
RAS