Protein Info for A4249_RS03935 in Brevundimonas sp. GW460-12-10-14-LB2

Annotation: 50S ribosomal protein L22

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 126 PF00237: Ribosomal_L22" amino acids 17 to 120 (104 residues), 128.2 bits, see alignment E=6.6e-42 TIGR01044: ribosomal protein uL22" amino acids 17 to 119 (103 residues), 107 bits, see alignment E=2.6e-35

Best Hits

Swiss-Prot: 78% identical to RL22_PHEZH: 50S ribosomal protein L22 (rplV) from Phenylobacterium zucineum (strain HLK1)

KEGG orthology group: K02890, large subunit ribosomal protein L22 (inferred from 90% identity to bsb:Bresu_1512)

Predicted SEED Role

"LSU ribosomal protein L22p (L17e)" in subsystem Ribosome LSU bacterial

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A160HVW5 at UniProt or InterPro

Protein Sequence (126 amino acids)

>A4249_RS03935 50S ribosomal protein L22 (Brevundimonas sp. GW460-12-10-14-LB2)
MAQTKNERRVAPTEARAKLVNVRISPQKLNLVAASIRGMPVQKALNELEFSRKRIAGDVR
KVLYSAISNAENNHNLDIDNLVVAEAFVGKNLVMKRFASRARGRSSRILKPFSEITIVVR
EAGEAA