Protein Info for A4249_RS03700 in Brevundimonas sp. GW460-12-10-14-LB2

Annotation: tetratricopeptide repeat protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 266 transmembrane" amino acids 23 to 45 (23 residues), see Phobius details PF09976: TPR_21" amino acids 23 to 187 (165 residues), 44.9 bits, see alignment E=5.9e-16

Best Hits

KEGG orthology group: None (inferred from 56% identity to bsb:Bresu_2537)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A160HXP8 at UniProt or InterPro

Protein Sequence (266 amino acids)

>A4249_RS03700 tetratricopeptide repeat protein (Brevundimonas sp. GW460-12-10-14-LB2)
MVDVFEQVEEELRSDKLKRLAKTWLPVFGVVLVVALIGALGWWGWDSLNSNKAAKAAEAY
DRGMEALRADKPMDARAAFEEAIKEGNGAYKVLALQQQAGLAVSANKFQDAVRLFDEAAK
ASSDPILSDPPALKAAFLVMDTAPLAEIEKRLTPLAEDKRPLHAFAQEALALARLQHGKT
KEAREAFVLLQLRQDVPDSIRQRAQIAVESIDAGTAAAIKPIIDAAAKATPPAAGAANAM
TPSAAQAAPAQAAPAQAAPAAAPAAQ