Protein Info for A4249_RS03630 in Brevundimonas sp. GW460-12-10-14-LB2

Annotation: discoidin domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1071 signal peptide" amino acids 1 to 23 (23 residues), see Phobius details PF03425: CBM_11" amino acids 34 to 178 (145 residues), 23.3 bits, see alignment E=5.6e-09 PF00754: F5_F8_type_C" amino acids 197 to 292 (96 residues), 46.8 bits, see alignment E=3.2e-16

Best Hits

Predicted SEED Role

"Hypothetical protein USSDB1E"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A160HY91 at UniProt or InterPro

Protein Sequence (1071 amino acids)

>A4249_RS03630 discoidin domain-containing protein (Brevundimonas sp. GW460-12-10-14-LB2)
MRNLLLAAASVLTLALAAPAIAQETRVLDSMDDATRWEASASTDVHAAVSAVAGHDGRAV
RLDYDFDGKAGYAVLSRPLPFDLPENYEISFWVRGAGPTNTFEVKLTDASADNVWWKQTA
RYDFPDGWTRFVIKRRQVSKAWGPSPETILRRAERVEFVVVAAEGGKGSVEIDQLTLRAL
PVEPPVPPQPIASDRRTASTASNAVDLDPKTAWTPPVGEASALTLDLGYEREFGGLTLRW
GERGAASDYRVSASLDGRDWRSLTTVTGGNGGVDWLRMPEATARWLRLEPLKPVPAPDVV
GSSGAGQRLGAAQATTYALNEIEVEPLTFGADRTVFLEAVAKENRRGLYPRGFSGEQSYW
TLVGVDGGGESGLIGEDGAIELRRAGPSIEPFVVDNGRLITWADVNIEQGLRDGDLPIPS
VTWTADDWTLKITSFADGPADQAQLWGRYDLTNTSSRPRTLTLALAARAMQVNAPRQFLA
IPGGVSPVETIGWDGAELKLNDTVRVQPLAAPDQVALATFDAGSDPQSLILPSARRPAVE
LMTTTDATGLAAGALTYEVTLQPGKTRTVGWVSQLSGDALAPEPVGQAAVVLGAVETRLA
AEWRAKLDRVELTLPPAAQRIEDALKSSLAHMLMSRQGPILQPGTRSYNRSWIRDGAMMA
EGLNRLGMAEHSADYLRWYAPYVFENGKVPCCVDARGADPVPENDSHGEFVFLAAETYRY
TKDEALLRQVWPQVQKAIAYMDDLRASTRTAAFQAPDQRHLYGLLPPTISHEGYSDKAAY
SYWDDFWGLLGYKDAVFIAETLGDADAAARYAAARDQFAADIRASITATAAHHGIDWIAG
AADRGDFDATSTTIALSPAGEQDNLPPELMARTFDRYWENFQNRLINRTAWKDYTPYEWR
LVGAYVRLGQKDRALDVLDFLMADRRPEAWNGWAEVVGREKREPRFIGDMPHAWISSDYI
RSALDLFAYERDRDHALVLAAGVPEAWLDTAEGVGVRDLRTAYGPLTYAYRKERQGYVLT
LGDGATPPGGFVLQWPEGQGRPERVRIDGRSATWSSDELVIPAGARRVVLN