Protein Info for A4249_RS01955 in Brevundimonas sp. GW460-12-10-14-LB2

Annotation: efflux RND transporter periplasmic adaptor subunit

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 320 signal peptide" amino acids 1 to 24 (24 residues), see Phobius details transmembrane" amino acids 25 to 25 (1 residues), see Phobius details PF16576: HlyD_D23" amino acids 77 to 275 (199 residues), 45.2 bits, see alignment E=7.1e-16 PF13437: HlyD_3" amino acids 199 to 290 (92 residues), 34.4 bits, see alignment E=3e-12

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (320 amino acids)

>A4249_RS01955 efflux RND transporter periplasmic adaptor subunit (Brevundimonas sp. GW460-12-10-14-LB2)
MTLKTYWLMTGAAVVIALGAGFGAARILDRPPTEAEHAEAGHAEDEPGEAAFVALTPQEA
ARAGVSIVAVQRGGGAELKLPGRVAFAPGAEAAVDAPLGGAVVRVHVGLGDRVAAGSPLI
TVRSPDGAASRADADAAGATVQAARAAERRDRTLFEQGWVSQARLDVTAAETRRAEAQHR
AARARVGAFGAPGADGLTVVRSPIAGVVTRLSASPGQVLHEEALQVAAVADPGRVELVFE
APPAAAAILKVGDRLESTVAGSRVMSGVVVAIAPANANGVVVVRARPVGETPRRDRSSPP
AFPPARAQERLSCRWTRCRP