Protein Info for A4249_RS01945 in Brevundimonas sp. GW460-12-10-14-LB2

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 210 transmembrane" amino acids 17 to 43 (27 residues), see Phobius details amino acids 51 to 70 (20 residues), see Phobius details amino acids 90 to 107 (18 residues), see Phobius details amino acids 118 to 139 (22 residues), see Phobius details amino acids 172 to 194 (23 residues), see Phobius details

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A168N7A5 at UniProt or InterPro

Protein Sequence (210 amino acids)

>A4249_RS01945 hypothetical protein (Brevundimonas sp. GW460-12-10-14-LB2)
MSGPAARTPEDAARRRFALWAGLSLIVLLPLWWIWGADLIIAALRPVAGGVFRLFGLTGA
IEPMAGGGWAVGTHLTESGRPITLPLSQEALRRMMLGFPLLAAFMIAPPRVERVWRMAAI
AVPVLCLVFILFLVLAVWGDLAPMLSPDLASESLGVRVRADQPPLPGLLAQVAIIGRYVA
YSIAPLLTALILWATLNPRALKALVAEIGE