Protein Info for A4249_RS01920 in Brevundimonas sp. GW460-12-10-14-LB2

Annotation: RHS repeat-associated core domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1434 signal peptide" amino acids 1 to 23 (23 residues), see Phobius details TIGR01643: YD repeat (two copies)" amino acids 358 to 390 (33 residues), 20.7 bits, see alignment (E = 4.6e-08) amino acids 862 to 897 (36 residues), 25.9 bits, see alignment (E = 1e-09) amino acids 928 to 957 (30 residues), 16.7 bits, see alignment (E = 7.9e-07) PF05593: RHS_repeat" amino acids 359 to 391 (33 residues), 26.9 bits, see alignment (E = 2.5e-10) amino acids 862 to 897 (36 residues), 23.5 bits, see alignment (E = 2.9e-09) amino acids 928 to 966 (39 residues), 25.6 bits, see alignment (E = 6.4e-10) TIGR03696: RHS repeat-associated core domain" amino acids 1139 to 1212 (74 residues), 70.9 bits, see alignment 9.9e-24

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1434 amino acids)

>A4249_RS01920 RHS repeat-associated core domain-containing protein (Brevundimonas sp. GW460-12-10-14-LB2)
MKIALKAALLLSSALVATPVWAQQQPTPPEHYTLDPRGVDLISGAWMPVRGKTQIGPADT
GLSYSRMLLDNGIWWDPAVGGITSCGIGVDCVVSIEGVTEVFTSTGTLTFAPKSDTASTL
VFDWGAENFTYTRGDGTIFLMERKGVGHLPDGVVTRKTTPAGLVTNYNYKVEKKCVEVGG
GEDPELYGRTAGCFEQISGRIQSYQNNAGYMVHYDYESNDFADELNWGVVKKVTALNIAV
DPCDGLAATCLYSQVWPSVTHQSVYNPNDIYDVDTDQSGRATTYRRFGAHVTSIDYPGGV
AEDVAVTYDGAGSTLWVASLTDASGTWTYSLSDAGVTRTLVSSGPLGQQITVTSDLTIGR
ATSVKNALNQTTSYTYDSQRRLQRVTQPEGDYAELTYDPRGNVTQTTYVPKPNSGLSNLT
TTASFPASCSNPLTCNKPTSTTDARGAVTDYAWNGTHGGLESMTLPAPTPGAVRPQTRIA
YAAQTAYYKDNYGTIVASPASITLPVSVSQCATNATPACVGTVDEVRQTVQYGTPGVANN
LLPTVVTQGDGAGTLSASVTTAYTPNGDVALVDGPLPGTEDTTYYRYDTARRPVGVIGPD
PDGPSGTLLRRAQRVTYDAGSRPTQVEQGIVNGLSDTDWNGFNSLQQQLTTYDAYGRPVI
TALRGGGAAHAVTHIGYDAAGRQNCVATRMNPAAFDSLPGSACDLGAQGAYGPDRITKYD
YNVASQLTKSTSGYGTGSSITKEATYTANGKPLTLKDGAGNVSTMVYDGFDRLVQLNYPD
AATGAGTSSATDLEQYGYDANSNVIGHRNRAGEIIDYSYDALNRQVGMGGAAIAARTISY
DNLNRLKAMNFAGGGASFYNIYDALNRLISQAQAGVGTMSYGYDQAGRRTSIHWPDGFWA
AYDYDYANELTGIRENGATDWRLSAWAYDNLGRPIAQSRGNGATTYWSYDAAGRLSALSH
DAAGTAGDFGLNLAYNPAGQIVTRTLSNNAYAYQPGVGNTAYANNGKNQVTSVNGAGIGY
DGRQNIIGVPGLGSYGYNGSNELTSATVGGATTGLSYDPGGRLYQSGSTRFLYDGQQVVG
EYNTSGGLLRRYVPGLGLDNVVTAYEGSGYDRRYLLADERRSVVSITDDAANALTINTYD
EYGQPGPGNSGRFQYTGQMWLPQAQLYHYRARAYAPQLGRFMQADPIGYRAGANVYAYVG
GDPMNFADPLGLSRLRHGDWVTEAQCVAGGGTVVQQSGGAYCSAGVASGPYLGGGGHDGA
AGMASGGSSGAGSGGATSSPAPAEPSKCPAGARLNLGRGPAATLFGGIIGGSVALTGNVS
VPWQSVLDGSFVGTQFSLTPSITFLGGFGLFAGAGENYSLGMSGQPSQTNVSYGSNWVFQ
LGAGDGGGVEVSSVFSANPNYGFSIGPRGALGAYGAGGYQRSVTFATPQIGCVS