Protein Info for A4249_RS01890 in Brevundimonas sp. GW460-12-10-14-LB2

Annotation: type IV secretion system protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 411 transmembrane" amino acids 41 to 62 (22 residues), see Phobius details amino acids 74 to 93 (20 residues), see Phobius details amino acids 171 to 190 (20 residues), see Phobius details amino acids 194 to 212 (19 residues), see Phobius details amino acids 223 to 245 (23 residues), see Phobius details amino acids 269 to 290 (22 residues), see Phobius details PF04610: TrbL" amino acids 51 to 274 (224 residues), 60.9 bits, see alignment E=8.2e-21

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A168N6X6 at UniProt or InterPro

Protein Sequence (411 amino acids)

>A4249_RS01890 type IV secretion system protein (Brevundimonas sp. GW460-12-10-14-LB2)
MAVCPALTTGDAFLSGLLLHIDCRAETLGGVGYQALASPSSFLSLAITGLLVVFVALFGL
RMMMGRTPSMRDSVMAMIKIGVVLTLASSWPAYKTLVYDVIVEGPEQIARALGGAAALPG
AAGDASLIARLQTTDRSIITLTNLGTGREPAATLPSPSGEQQRFPIADDPAFGWARIVFL
TGVIAAFAVVRLTAGLLLALTPLFAGLLLFGLSRGLVIGWARALVFTFLASVASTLIWGV
QLALLEPWLTRVVTLRQSSTLAASAPVEILVLNLGFAIALFGALAILLRLSFMTSWPSLG
RASYPWDRPAREIAVITPQGRETRSAALPAGTFGLGAPSRALAIADAVRSTERREGQALA
ARGSTSTPSVVQSSSGSGATSDSFAIPPAGQALRRTKPRTSLAAALRDRRS