Protein Info for A4249_RS01690 in Brevundimonas sp. GW460-12-10-14-LB2

Annotation: TonB-dependent receptor

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1023 signal peptide" amino acids 1 to 53 (53 residues), see Phobius details PF13620: CarboxypepD_reg" amino acids 65 to 134 (70 residues), 43.5 bits, see alignment 1.8e-15

Best Hits

KEGG orthology group: None (inferred from 65% identity to bsb:Bresu_2322)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A168NVX4 at UniProt or InterPro

Protein Sequence (1023 amino acids)

>A4249_RS01690 TonB-dependent receptor (Brevundimonas sp. GW460-12-10-14-LB2)
MSIGRRALFKEGFVLNSRSIRQRLLASTVVGGALLAAIPVMSLVALPSVAHAQSQTGALR
ISIQAGGQPVAGATVTVNSSVSLVTRSGVTDSAGFVRLSGLDPAINYSVNVVAPGYDAFT
ANNVAVVSGQERSLGYVLKGGDVSTLGDIVVTGTSLASVDVTSATVGTTLTLGVVESLPT
GRSYQSYLQLVPGVKPSSGGNPSSRSGINYSDIGGATGTSTDNVYYLDGVDVTDPSTGTF
GSNFNSEIIQEQQVIVSGVPAEYAGGSGLISRVVTKSGGNEFHGSLNYYFQNDGLVAKDE
HTTSGGFSTYDTAATLGGPIIRDRLWFYGSYQKKHREDEVLDVNSGNVLRTVTNDGEYTF
GKLTWQITDDDRLTASYFEDPTSISGSSSSATLNNRDVAQEQGGKNYKVEYGRTWGDLQL
GAYWFRHEGEVTTSAADQSVRDTVTFRNSAGSTLAQRQLGGAGSNLETHRNRDEFGLNFE
YYLDTAFGSHTFKGGYINTENVYEENGTVPGGVTYQSLAPIYSGTTYLDYTTASGANAWT
GRAIVQADNARVLAAIQGNATARAAVDTNLDGTVSQAELNAYRFTNTAGAPYGNVNVYRA
LRTISAPYEVKSEGQSLYLQDTWTLNQLTINAGVRAEKWEHFASDGSKTATFDWEYAPRL
SVVYDVLGDGRSKVFGFAGRYYDPIRNNMSDFAGALTGPVDEEQININGTWVTFRTRGGA
TTPDALFSPATKTPYTDEFMLGASTTLGSSVGLTATVTRRETRDILEDFDLTLYSDPTLT
AATAPFGYAYPGSFYYLPYSYFGYASKPNSNYVIGTLPGGERNYTGFEVTVTKFKTDNWQ
GQASYTYNKAEGNSNSDSNADFQGDWIALDPRAPNMYGPQPGNIEHQFKAYASYDFNFGL
QVSGVFNWNSGALYTPAQLISGRYLPLMDNGSTSGGVQDTFVLPNNVGSATGPSYYTFDM
RFRYQRPLPIGNAELFLDIFNILDNQAATAEQKLVAGSGQYAFGEANAWVQPRRAYLGVR
YTF