Protein Info for A4249_RS01630 in Brevundimonas sp. GW460-12-10-14-LB2

Annotation: ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 390 transmembrane" amino acids 15 to 39 (25 residues), see Phobius details amino acids 265 to 288 (24 residues), see Phobius details amino acids 321 to 380 (60 residues), see Phobius details PF12704: MacB_PCD" amino acids 18 to 239 (222 residues), 49.5 bits, see alignment E=6.8e-17 PF02687: FtsX" amino acids 275 to 384 (110 residues), 39 bits, see alignment E=7.6e-14

Best Hits

KEGG orthology group: K02004, (no description) (inferred from 86% identity to bsb:Bresu_1080)

Predicted SEED Role

"FIG00482216: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A168N573 at UniProt or InterPro

Protein Sequence (390 amino acids)

>A4249_RS01630 ABC transporter permease (Brevundimonas sp. GW460-12-10-14-LB2)
MSLALSTLLFEWRRYMAAVMALALSGLLVLAMTGVFIGIGKGFTATIERSNADIFIMQPG
AKSLIGGPSGVPRRFIPLAYNHPEVVEVMPLDGAGGTFQNIKNVDPTKSQADNASQGAPR
QKFVQASIIDTRPGSVTIPTDYSQELVDALRQPYTVAVDETALTTLGVKLGDKALYNGQT
VTVVGVTRGYPNMMQPGVVMSRDTLRMLGQADTGPRVGPLMVKLRDPARAPIVVAQLNAM
GAGQWKAWTKQQLADANAGAMFEEGILVIIIGGCVVLGIIIGVAITWQTLRGAIMANIKE
FASLRALGVSMGSLRRIVVELSFWVGVVGVIAAIVLTWLVSLLAMMGAVIIALPLSLLII
VGIGLIAIAMVSGLLSLGILKNSQPADLLR