Protein Info for A4249_RS01305 in Brevundimonas sp. GW460-12-10-14-LB2

Annotation: phage terminase large subunit family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 622 PF05876: GpA_ATPase" amino acids 2 to 240 (239 residues), 204.8 bits, see alignment E=1.8e-64 PF20454: GpA_nuclease" amino acids 277 to 564 (288 residues), 157.1 bits, see alignment E=6e-50

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A168N2Y6 at UniProt or InterPro

Protein Sequence (622 amino acids)

>A4249_RS01305 phage terminase large subunit family protein (Brevundimonas sp. GW460-12-10-14-LB2)
MNATTPYGVEMMECLDNDYPARRVIVSAAAQLIKSELFLNWAGQTICDDPAPMMLVLPSL
DELRNWNSTKWQPTLDATPALKRRVFERVERSRAGSTTNFKAFRGGFLMVTTAMSSKGLQ
GRSVKRLACDEVSEFPLDTGGRGDPIKQAETRGDGHDDFKALYTSTPKELPGCRITKMLH
AGDHRIYYVDCPHCGEAQQLVFEQLQPPTVENPRVAYGCLACGSDIDEIHKPAMLAGGRW
IKTYTSEDPANPAPPLHFPADQIAHWRARSSEGRDPSFHLWQAYSPFKSWSVLWGEYLEA
SKDDADLKVFWQQKLGRAWDPATDAPDEQKLFEARGRFVRRGVVPAWACELVLAVDNQGD
RIEWDGYAMGPDLSMARFDWGVIEHDPLTAEAWASLAEVVGRRYPGEVTIPLGWDMVGVD
LGGKKGTTERVYRFVRARPNVVAVKGSSNPDEVPLRKGKRRVLRLKDGSTLTIEPHLIGG
HGLKLDIYSMLQTSLEAETERLPGGLYNPADATLEDFKQYTAEVYRKPATQRAGAIGHWD
KLPGRSNERLDNAIYARGMFWSRGAYTRTEDEWRALFEARAERPEAVLPLFDAVEIPMVM
PAEPASNPGPTNNAWHSSRRKL