Protein Info for A4249_RS01105 in Brevundimonas sp. GW460-12-10-14-LB2

Annotation: YncE family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 479 signal peptide" amino acids 1 to 23 (23 residues), see Phobius details TIGR02276: 40-residue YVTN family beta-propeller repeat" amino acids 93 to 132 (40 residues), 32.4 bits, see alignment 3.4e-12 amino acids 308 to 347 (40 residues), 35.7 bits, see alignment 3.3e-13 PF10282: Lactonase" amino acids 126 to 325 (200 residues), 27.7 bits, see alignment E=2.3e-10

Best Hits

KEGG orthology group: None (inferred from 91% identity to bsb:Bresu_1253)

Predicted SEED Role

"Surface antigen gene"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A168N1N1 at UniProt or InterPro

Protein Sequence (479 amino acids)

>A4249_RS01105 YncE family protein (Brevundimonas sp. GW460-12-10-14-LB2)
MTLTARAIAALVLSLSAGHALADQVPGAAAAPAIPISSQDRFYSADQFSNTVSVVDPSTN
GLLGVISLGEPTPANLSPLYKGQLLVHGIGAAPDGKTIAVVSIGSNSVSFIDTASNTVKH
TTYVGRSPHEAFFTPDGREVWVTVRGEAYVSVLDAATYQETARVETPNGPGMTIFSPDGR
YAYICSSFSPETVVVETATRQIVGRVAQASPFCPDIAATPDGSQVWMTLKDVGKTMVFNA
RPPFAVLQTLDTGPLTNHVNIVRNAAGQFAYVTVGTENRVKVYRTDTFTLVTEIEVGSLP
HGLWPSGDGSRIYVGLENGDGVAVIDTLANRVIATVPIGQGPQGVTYVPRAVTQGDGRAN
LTPLGAARASHQLVLTGEGDTRSQATLFEQGQVQMLQIAAAGLQPGKPYVLAFANAADGS
GTLEPLTKFMTNPAGSAVVNAVGPIRQVVAADAGAPRRWLVIASGTPEAIGAVVQRQSE