Protein Info for A4249_RS01035 in Brevundimonas sp. GW460-12-10-14-LB2

Annotation: S8 family serine peptidase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1082 PF00082: Peptidase_S8" amino acids 66 to 486 (421 residues), 125.2 bits, see alignment E=5e-40 TIGR02601: autotransporter-associated beta strand repeat" amino acids 541 to 572 (32 residues), 36.8 bits, see alignment (E = 1.3e-13) PF12951: PATR" amino acids 542 to 571 (30 residues), 37 bits, see alignment (E = 4.3e-13) PF03797: Autotransporter" amino acids 813 to 1062 (250 residues), 121 bits, see alignment E=1.2e-38

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A168N157 at UniProt or InterPro

Protein Sequence (1082 amino acids)

>A4249_RS01035 S8 family serine peptidase (Brevundimonas sp. GW460-12-10-14-LB2)
MVGTTAAAQTTPAPTAPTGGFYMANGTRTTNYQTAIASWRADSQFSVDYSKGFLGLEHAY
AMGLSGRGQTVGVNDAGVYMAHPLFGSAGKVTGLRSQAVAGYGNDGMINPRRQWEGHGTH
VSGTIAGDRVTGQPMFGNAFNAKLYAATANFSAGDFLWYKDAIIDGKIVATQNQNIVDLA
NTGQVRIINNSWGSGNSLPFNASLPTVLASFNRNYGDFYKPVLDKDVLVVFSAGNGFGVH
AGIDAAAPLNDPRLRSNWLSVANYSSFTAADPSTSFCGQTATWCVAGPGSAVVSSVPAYT
MDRAGILALYPRANYAGLYSATTVTALQNASMNQFIGVLNAYLAARAAGGPTYNEDAWRR
EVGRQAAAITLVSGARLGDPDGFTSVLAGLLTSTNNMALLTPAFSGAVLQYANDELQRVL
NQYIKYTGGGYAAYTGTSMAAPNISGFAALLMENFPEYSTSLISDILVSSSKDLDTPGVD
LRSGWGAPQMDVALRGPTALRDTRDVTVAVGTVDIWSNNIGDARDRYSAEVKANFGNDIG
GLVKKGGGQLILTGANDYSGPTRVEGGLLTVNGSLLRSSATVGGVGMIGGTGTLANLTAE
SGGVVSPGDGVNPFGTLTVAGNLNFKPGSFLWIRSSVNGAAYSRLNVGGTTKIDGGQVIL
KADNGEWNLRTRMNIINSTGAVTGTFSGAQSDLAFLAPVLTYSTNGVVLTVRRNDVTVAS
LGRTDNQQSVGGALDVMINNTATGTNRDLSLENALLDASVPAVQGALSGLTGEVHATLGG
LAVSDARVIRDAMSERGRSQGGAATYVGNGVSVWGSGVFGNGQGSAHDGLAGFRNEASGY
LVGAEKALANDVHVGVALGETRAELRSPRLRSTGRVTSEQIGVYGGAGVGDFQIRVGGSW
ASADVRTDRTAQLNAFTNALVGDYDGDVWQAYGEVAWSRAVGGTMFEPYAAYSHVEYDAD
VAETGGDAALSGNVKQKADLLTAGFRTRTVLAGGEGRARLSAVTHLAYTHDLNGDGPVFD
AAFADGPRFLIDGANPGDDVISGGLGFNIQATERTAIELGYTGLYKDEYRDNRIYGRFSV
KF