Protein Info for A4249_RS00260 in Brevundimonas sp. GW460-12-10-14-LB2

Annotation: YqgE/AlgH family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 189 PF02622: DUF179" amino acids 16 to 176 (161 residues), 150.4 bits, see alignment E=2.1e-48

Best Hits

Swiss-Prot: 57% identical to Y3395_CAUVC: UPF0301 protein CC_3395 (CC_3395) from Caulobacter vibrioides (strain ATCC 19089 / CB15)

KEGG orthology group: K07735, putative transcriptional regulator (inferred from 75% identity to bsb:Bresu_0812)

Predicted SEED Role

"UPF0301 protein YqgE"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A168MWS0 at UniProt or InterPro

Protein Sequence (189 amino acids)

>A4249_RS00260 YqgE/AlgH family protein (Brevundimonas sp. GW460-12-10-14-LB2)
MSEASTLTGRLLVAMPGIDDARFEHAVILICAHGPDHAMGLRLDRPAPGVDLKTVLDKLD
APAPDQSIGRAVLMGGPVERERGFVLHTDDWTVGDDTLAFGDGLAMTGTREALAAMTDEI
AGPRRSALLLGYAGWGEGQLEEELAENVWLTADADLDLIFDSEHTSKWTRALAQLGVDAA
MLSSQGGRA