Protein Info for b1953 in Escherichia coli BW25113

Name: b1953
Annotation: orf, hypothetical protein (VIMSS)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 25 50 75 PF10733: DUF2525" amino acids 18 to 75 (58 residues), 106 bits, see alignment E=5.7e-35

Best Hits

Swiss-Prot: 100% identical to YODD_ECOLI: Uncharacterized protein YodD (yodD) from Escherichia coli (strain K12)

KEGG orthology group: None (inferred from 100% identity to eco:b1953)

Predicted SEED Role

"putative cytoplasmic protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See P64519 at UniProt or InterPro

Protein Sequence (75 amino acids)

>b1953 orf, hypothetical protein (VIMSS) (Escherichia coli BW25113)
MKTAKEYSDTAKREVSVDVDALLAAINEISESEVHRSQNDSEHVSVDGREYHTWRELADA
FELDIHDFSVSEVNR