Protein Info for b1756 in Escherichia coli BW25113

Name: ynjD
Annotation: predicted transporter subunit: ATP-binding component of ABC superfamily (NCBI)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 217 PF00005: ABC_tran" amino acids 17 to 161 (145 residues), 103 bits, see alignment E=1.1e-33

Best Hits

Swiss-Prot: 100% identical to YNJD_ECOLI: Uncharacterized ABC transporter ATP-binding protein YnjD (ynjD) from Escherichia coli (strain K12)

KEGG orthology group: K05779, putative thiamine transport system ATP-binding protein (inferred from 100% identity to eco:b1756)

Predicted SEED Role

"ABC transporter, ATP-binding protein YnjD"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See P76909 at UniProt or InterPro

Protein Sequence (217 amino acids)

>b1756 predicted transporter subunit: ATP-binding component of ABC superfamily (NCBI) (Escherichia coli BW25113)
MLCVKNVSLRLPESRLLTNVNFTVDKGDIVTLMGPSGCGKSTLFSWMIGALAEQFSCTGE
LWLNEQRIDILPTAQRQIGILFQDALLFDQFSVGQNLLLALPATLKGNARRNAVNDALER
SGLEGAFHQDPATLSGGQRARVALLRALLAQPKALLLDEPFSRLDVALRDNFRQWVFSEV
RALAIPVVQVTHDLQDVPADSSVLDMAQWSENYNKLR