Protein Info for b1755 in Escherichia coli BW25113

Name: ynjC
Annotation: fused transporter subunits of ABC superfamily: membrane components (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 511 transmembrane" amino acids 7 to 33 (27 residues), see Phobius details amino acids 53 to 80 (28 residues), see Phobius details amino acids 92 to 112 (21 residues), see Phobius details amino acids 132 to 155 (24 residues), see Phobius details amino acids 179 to 202 (24 residues), see Phobius details amino acids 239 to 260 (22 residues), see Phobius details amino acids 281 to 304 (24 residues), see Phobius details amino acids 316 to 337 (22 residues), see Phobius details amino acids 346 to 369 (24 residues), see Phobius details amino acids 376 to 396 (21 residues), see Phobius details amino acids 428 to 449 (22 residues), see Phobius details amino acids 482 to 504 (23 residues), see Phobius details PF00528: BPD_transp_1" amino acids 346 to 502 (157 residues), 30.7 bits, see alignment E=1.3e-11

Best Hits

Swiss-Prot: 100% identical to YNJC_ECOLI: Inner membrane ABC transporter permease protein YnjC (ynjC) from Escherichia coli (strain K12)

KEGG orthology group: K05778, putative thiamine transport system permease protein (inferred from 100% identity to eco:b1755)

Predicted SEED Role

"ABC transporter, permease protein YnjC"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See P76224 at UniProt or InterPro

Protein Sequence (511 amino acids)

>b1755 fused transporter subunits of ABC superfamily: membrane components (RefSeq) (Escherichia coli BW25113)
MATPLRYALIFLLWAMVAVIYAPLIPAALTLISPALSLTHWQALFADPQLPQALLATLVS
TTIAAVGALLIALLVIVALWPGPKWQRMCARLPWLLAIPHVAFATSALLLFADGGLLYDY
FPYFTPPMDRFGIGLGLTLAVKESAFLLWILAAVLSEKWLLQQVIVLDSLGYSRWQCLNW
LLLPSVAPALAMAMLAIVAWSLSVVDVAIILGPGNPPTLAVISWQWLTQGDIDQQTKGAL
ASLLLMLLLAAYVLLSYLLWRSWRRTIPRVDGVRKPATPLLPGNTLAIFLPLTGVLCVVL
LAILADQSTINSEALINSLTMGLVATFIALLLLLLWLEWGPQRRQLWLWLPILLPALPLV
AGQYTLALWLKLDGSWTAVVWGHLLWVMPWMLFILQPAWQRIDSRLILIAQTLGWSRAKI
FFYVKCPLMLRPVLIAFAVGFAVGIAQYMPTLWLGAGRFPTLTTEAVALSSGGSNGILAA
QALWQLLLPLIIFALTALVAKWVGYVRQGLR