Protein Info for b1411 in Escherichia coli BW25113

Name: ynbD
Annotation: predicted phosphatase, inner membrane protein (NCBI)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 430 signal peptide" amino acids 1 to 24 (24 residues), see Phobius details transmembrane" amino acids 49 to 72 (24 residues), see Phobius details amino acids 83 to 103 (21 residues), see Phobius details amino acids 125 to 142 (18 residues), see Phobius details amino acids 153 to 170 (18 residues), see Phobius details amino acids 176 to 194 (19 residues), see Phobius details amino acids 213 to 236 (24 residues), see Phobius details amino acids 273 to 293 (21 residues), see Phobius details amino acids 372 to 392 (21 residues), see Phobius details PF00782: DSPc" amino acids 306 to 429 (124 residues), 95.7 bits, see alignment E=2.1e-31 PF00102: Y_phosphatase" amino acids 355 to 419 (65 residues), 21.2 bits, see alignment E=2e-08

Best Hits

Swiss-Prot: 100% identical to YNBD_ECOLI: Uncharacterized protein YnbD (ynbD) from Escherichia coli (strain K12)

KEGG orthology group: None (inferred from 100% identity to eco:b1411)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See P76093 at UniProt or InterPro

Protein Sequence (430 amino acids)

>b1411 predicted phosphatase, inner membrane protein (NCBI) (Escherichia coli BW25113)
MLQGAGWLLLLAPFFFFTYGSLNQFTAVQDLNSHDIPSQVFGWETAIPFLPWTIVPYWSL
DLLYGFSLFVCSTTFEQRRLVHRLILATVMACCGFLLYPLKFSFIRPEVSGVTGWLFSQL
ELFDLPYNQSPSLHIILCWLLWRHFRQHLAERWRKVCGGWFLLIAISTLTTWQHHFIDVI
TGLAVGMLIDWMVPVDRRWNYQKPDQRRIKIALPYVVGAGSCIVLMELMMMIQLWWSVWL
CWPVLSLLIIGRGYGGLGAITTGKDSQGKLPPAVYWLTLPCRIGMWLSMRWFCRRLEPVS
KMTAGVYLGAFPRHIPAQNAVLDVTFEFPRGRATKDRLYFCVPMLDLVVPEEGELRQAVA
MLETLREEQGSVLVHCALGLSRSALVVAAWLLCYGHCKTVNEAISYIRARRPQIVLTDEH
KAMLRLWENR