Protein Info for b1194 in Escherichia coli BW25113

Name: ycgR
Annotation: protein involved in flagellar function (NCBI)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 244 PF07317: PilZN" amino acids 8 to 109 (102 residues), 86.7 bits, see alignment E=1e-28 PF07238: PilZ" amino acids 112 to 229 (118 residues), 36 bits, see alignment E=7.4e-13

Best Hits

Swiss-Prot: 100% identical to YCGR_ECOLI: Flagellar brake protein YcgR (ycgR) from Escherichia coli (strain K12)

KEGG orthology group: None (inferred from 100% identity to eco:b1194)

Predicted SEED Role

"Inner membrane protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See P76010 at UniProt or InterPro

Protein Sequence (244 amino acids)

>b1194 protein involved in flagellar function (NCBI) (Escherichia coli BW25113)
MSHYHEQFLKQNPLAVLGVLRDLHKAAIPLRLSWNGGQLISKLLAITPDKLVLDFGSQAE
DNIAVLKAQHITITAETQGAKVEFTVEQLQQSEYLQLPAFITVPPPTLWFVQRRRYFRIS
APLHPPYFCQTKLADNSTLRFRLYDLSLGGMGALLETAKPAELQEGMRFAQIEVNMGQWG
VFHFDAQLISISERKVIDGKNETITTPRLSFRFLNVSPTVERQLQRIIFSLEREAREKAD
KVRD