Protein Info for b1172 in Escherichia coli BW25113

Name: ymgG
Annotation: conserved protein, UPF0757 family (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 114 signal peptide" amino acids 1 to 23 (23 residues), see Phobius details PF13436: Gly-zipper_OmpA" amino acids 25 to 61 (37 residues), 14.6 bits, see alignment E=3.5e-06 amino acids 50 to 89 (40 residues), 14.5 bits, see alignment E=3.7e-06 amino acids 94 to 111 (18 residues), 12.5 bits, see alignment 1.6e-05 PF13441: Gly-zipper_YMGG" amino acids 70 to 111 (42 residues), 30.2 bits, see alignment E=4.5e-11 PF13488: Gly-zipper_Omp" amino acids 74 to 113 (40 residues), 25.6 bits, see alignment E=1.3e-09

Best Hits

Swiss-Prot: 100% identical to YMGG_ECOBR: UPF0757 protein YmgG (ymgG) from Escherichia coli (strain B / REL606)

KEGG orthology group: None (inferred from 100% identity to eco:b1172)

Predicted SEED Role

"FIG00639301: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q7DFV3 at UniProt or InterPro

Protein Sequence (114 amino acids)

>b1172 conserved protein, UPF0757 family (RefSeq) (Escherichia coli BW25113)
MKKKILAFGLISALFCSTPAMADMNRTTKGALLGAGVGLLTGNGVNGVLKGAAVGAGVGA
VTEKGRDGKNARKGAKVGAAVGAVTGVLTGNGLEGAIKGAVIGGTGGAILGKMK