Gene info for b1028 in Escherichia coli BW25113

Name: ymdE
Annotation: orf, hypothetical protein (VIMSS)
Type 7: Pseudogene derived from a protein-coding gene
Located on scaffold 7023, + strand, nucleotides 1,094,728 to 1,095,069
See nucleotide sequence around b1028 or for all of scaffold 7023

Other databases: MicrobesOnline, EcoCyc

Nearby Genes

500 ntycdR and ycdS are separated by 8 nucleotidesycdS and ycdT are separated by 586 nucleotidesycdT and insF-4 are separated by 40 nucleotidesinsF-4 and insE overlap by 4 nucleotidesinsE and ymdE are separated by 67 nucleotidesymdE and ycdU overlap by 4 nucleotidesycdU and serX are separated by 735 nucleotidesserX and ycdW are separated by 233 nucleotidesycdW and ycdX are separated by 54 nucleotidesycdX and ycdY are separated by 23 nucleotides b1023: ycdR - predicted enzyme associated with biofilm formation (NCBI), at 1,087,062 to 1,089,080 ycdR b1024: ycdS - predicted outer membrane protein (NCBI), at 1,089,089 to 1,091,512 ycdS b1025: ycdT - predicted diguanylate cyclase (NCBI), at 1,092,099 to 1,093,457 ycdT b1026: insF-4 - IS3 element protein InsF (NCBI), at 1,093,498 to 1,094,364 insF-4 b1027: insE - IS3 element protein InsE (RefSeq), at 1,094,361 to 1,094,660 insE b1028: ymdE - orf, hypothetical protein (VIMSS), at 1,094,728 to 1,095,069 ymdE b1029: ycdU - predicted inner membrane protein (NCBI), at 1,095,066 to 1,096,052 ycdU b1032: serX - tRNA-Ser (NCBI), at 1,096,788 to 1,096,875 serX b1033: ycdW - putative dehydrogenase (VIMSS), at 1,097,109 to 1,098,047 ycdW b1034: ycdX - hypothetical protein (NCBI), at 1,098,102 to 1,098,839 ycdX b1035: ycdY - hypothetical protein (NCBI), at 1,098,863 to 1,099,417 ycdY
Locus Name Description Strand Phenotype
b1023 ycdR predicted enzyme associated with biofilm formation (NCBI) - insig.
b1024 ycdS predicted outer membrane protein (NCBI) - insig.
b1025 ycdT predicted diguanylate cyclase (NCBI) + strong
b1026 insF-4 IS3 element protein InsF (NCBI) - no data
b1027 insE IS3 element protein InsE (RefSeq) - no data
b1028 ymdE orf, hypothetical protein (VIMSS) + sig.
b1029 ycdU predicted inner membrane protein (NCBI) + sig.
b1032 serX tRNA-Ser (NCBI) - no data
b1033 ycdW putative dehydrogenase (VIMSS) + insig.
b1034 ycdX hypothetical protein (NCBI) + insig.
b1035 ycdY hypothetical protein (NCBI) + insig.

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