Gene info for b0561 in Escherichia coli BW25113

Name: tfaD
Annotation: orf, hypothetical protein (VIMSS)
Type 7: Pseudogene derived from a protein-coding gene
Located on scaffold 7023, + strand, nucleotides 580,883 to 581,320
See nucleotide sequence around b0561 or for all of scaffold 7023

Other databases: MicrobesOnline, EcoCyc

Nearby Genes

500 ntybcV and ybcW are separated by 285 nucleotidesybcW and ylcI are separated by 164 nucleotidesylcI and nohB are separated by 388 nucleotidesnohB and ylcF overlap by 26 nucleotidesylcF and tfaD overlap by 3 nucleotidestfaD and ybcY are separated by 54 nucleotidesybcY and tfaX are separated by 146 nucleotidestfaX and appY are separated by 545 nucleotidesappY and ompT are separated by 249 nucleotidesompT and pauD are separated by 423 nucleotides b0558: ybcV - putative an envelop protein (VIMSS), at 578,407 to 578,817 ybcV b0559: ybcW - DLP12 prophage; predicted protein (NCBI), at 579,103 to 579,309 ybcW b4589: ylcI - hypothetical protein (RefSeq), at 579,474 to 579,668 ylcI b0560: nohB - DLP12 prophage; DNA packaging protein (NCBI), at 580,057 to 580,602 nohB b4634: ylcF - no description, at 580,577 to 580,885 ylcF b0561: tfaD - orf, hypothetical protein (VIMSS), at 580,883 to 581,320 tfaD b0562: ybcY - orf, hypothetical protein (VIMSS), at 581,375 to 582,029 ybcY b0563: tfaX - DLP12 prophage; predicted protein (RefSeq), at 582,176 to 582,358 tfaX b0564: appY - DLP12 prophage; DNA-binding transcriptional activator (NCBI), at 582,904 to 583,653 appY b0565: ompT - DLP12 prophage; outer membrane protease VII (outer membrane protein 3b) (NCBI), at 583,903 to 584,856 ompT b4635: pauD - tRNA-OTHER (RefSeq), at 585,280 to 585,324 pauD
Locus Name Description Strand Phenotype
b0558 ybcV putative an envelop protein (VIMSS) - no data
b0559 ybcW DLP12 prophage; predicted protein (NCBI) + insig.
b4589 ylcI hypothetical protein (RefSeq) - sig.
b0560 nohB DLP12 prophage; DNA packaging protein (NCBI) + sig.
b4634 ylcF no description + insig.
b0561 tfaD orf, hypothetical protein (VIMSS) + insig.
b0562 ybcY orf, hypothetical protein (VIMSS) - insig.
b0563 tfaX DLP12 prophage; predicted protein (RefSeq) + sig.
b0564 appY DLP12 prophage; DNA-binding transcriptional activator (NCBI) + sig.
b0565 ompT DLP12 prophage; outer membrane protease VII (outer membrane protein 3b) (NCBI) - strong
b4635 pauD tRNA-OTHER (RefSeq) + no data

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