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  • Negative cofitness for PP_5703 from Pseudomonas putida KT2440

    putative type 3 effector HopPmaJ
    SEED: Type III effector HopPmaJ

    Computing cofitness values with 989 experiments...

    Genes with the strongest negative cofitness:

    Rank Hit Name Description Cofit  
    1 PP_3182 GGDEF domain protein -0.18
    2 PP_4880 exoribonuclease R -0.15
    3 PP_4342 flagellar synthesis regulator, putative ATPase -0.15
    4 PP_3649 Transcriptional regulator, GntR family -0.15
    5 PP_3027 conserved protein of unknown function -0.15
    6 PP_3771 conserved protein of unknown function -0.15
    7 PP_3350 conserved exported protein of unknown function -0.15
    8 PP_2342 conserved protein of unknown function -0.14
    9 PP_1733 membrane ATPase of the MinC-MinD-MinE system -0.14
    10 PP_1906 ribosomal large subunit pseudouridine synthase C -0.14
    11 PP_5327 putative phosphate ABC transporter, permease subunit -0.14
    12 PP_2220 C4-type zinc finger protein, DksA/TraR family -0.14
    13 PP_4333 CheW domain protein -0.14
    14 PP_0401 Ribosomal RNA small subunit methyltransferase A -0.13
    15 PP_0872 Peptide chain release factor 3 -0.13
    16 PP_5310 junction-specific ATP-dependent DNA helicase -0.13
    17 PP_3300 Transcriptional regulator, tetR family -0.13
    18 PP_3196 Nodulation protein d1 -0.13
    19 PP_3549 multidrug efflux transport system - membrane fusion protein -0.13
    20 PP_1232 conserved exported protein of unknown function -0.13

    Or look for positive cofitness