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  • Negative cofitness for PP_4808 from Pseudomonas putida KT2440

    23S rRNA m3psi1915 methyltransferase
    SEED: LSU m3Psi1915 methyltransferase RlmH
    KEGG: hypothetical protein

    Computing cofitness values with 1005 experiments...

    Genes with the strongest negative cofitness:

    Rank Hit Name Description Cofit  
    1 PP_5517 conserved exported protein of unknown function -0.18
    2 PP_2714 Sensor histidine kinase -0.17
    3 PP_1063 DNA-binding transcriptional regulator, homocysteine-binding -0.17
    4 PP_5687 putative permease of the major facilitator superfamily -0.17
    5 PP_3376 putative phosphonate dehydrogenase -0.16
    6 PP_1348 putative MutT/nudix family protein/thiamine-phosphate pyrophosphorylase -0.15
    7 PP_3788 putative Non-ribosomal peptide synthetase -0.15
    8 PP_4103 Low-affinity inorganic phosphate transporter -0.15
    9 PP_1948 Benzaldehyde dehydrogenase -0.14
    10 PP_3787 conserved protein of unknown function -0.14
    11 PP_3790 diaminopimelate epimerase -0.14
    12 PP_1009 glyceraldehyde-3-phosphate dehydrogenase -0.14
    13 PP_5623 conserved membrane protein of unknown function -0.14
    14 PP_1231 quinolinate synthase [4Fe-4S] cluster subunit -0.14
    15 PP_4636 acetyl-CoA acetyltransferase -0.14
    16 PP_0966 Histidinol dehydrogenase -0.14
    17 PP_0965 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) -0.14
    18 PP_t13 tRNA-Lys -0.14
    19 PP_0735 molybdopterin-synthase adenylyltransferase -0.14
    20 PP_4457 opine oxidase subunit B -0.13

    Or look for positive cofitness