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  • Negative cofitness for PP_4532 from Pseudomonas putida KT2440

    ATP-dependent DEAD-box RNA helicase require for 50S ribosomal subunit biogenesis
    SEED: ATP-dependent RNA helicase SrmB

    Computing cofitness values with 989 experiments...

    Genes with the strongest negative cofitness:

    Rank Hit Name Description Cofit  
    1 PP_1798 Outer membrane efflux protein -0.32
    2 PP_0066 Ribosomal RNA small subunit methyltransferase B -0.29
    3 PP_1797 HlyD family secretion protein -0.29
    4 PP_1627 conserved protein of unknown function -0.29
    5 PP_4971 putative Outer membrane-bound lytic murein transglycolase A -0.27
    6 PP_3627 conserved protein of unknown function -0.27
    7 PP_4246 Periplasmic binding protein -0.26
    8 PP_0540 conserved inner membrane protein -0.26
    9 PP_5284 UPF0758 protein PP_5284 -0.25
    10 PP_3694 conserved protein of unknown function -0.25
    11 PP_5060 conserved protein of unknown function -0.25
    12 PP_1871 Protease HtpX -0.25
    13 PP_1803 UDP-sugar epimerase -0.24
    14 PP_1204 putative Lipoprotein -0.24
    15 PP_1791 putative Aldolase/synthase -0.24
    16 PP_1075 glycerol kinase -0.23
    17 PP_5283 periplasmic dipeptide transport protein -0.23
    18 PP_1789 Hydrolase, haloacid dehalogenase-like family -0.23
    19 PP_5360 conserved protein of unknown function -0.22
    20 PP_4461 Major facilitator family transporter -0.22

    Or look for positive cofitness