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  • Negative cofitness for PP_4475 from Pseudomonas putida KT2440

    succinylglutamate desuccinylase
    SEED: Succinylglutamate desuccinylase (EC 3.5.1.96)
    KEGG: succinylglutamate desuccinylase

    Computing cofitness values with 995 experiments...

    Genes with the strongest negative cofitness:

    Rank Hit Name Description Cofit  
    1 PP_1655 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD -0.52
    2 PP_1798 Outer membrane efflux protein -0.46
    3 PP_1627 conserved protein of unknown function -0.44
    4 PP_0066 Ribosomal RNA small subunit methyltransferase B -0.44
    5 PP_4971 putative Outer membrane-bound lytic murein transglycolase A -0.39
    6 PP_3627 conserved protein of unknown function -0.39
    7 PP_1774 conserved exported protein of unknown function -0.39
    8 PP_1650 Sensor protein GacS -0.38
    9 PP_4495 aromatic amino acid transport protein -0.38
    10 PP_4099 two-componenent system BarA/UvrY - regulatory subunit -0.38
    11 PP_1803 UDP-sugar epimerase -0.37
    12 PP_0540 conserved inner membrane protein -0.37
    13 PP_t49 tRNA-Met -0.37
    14 PP_1797 HlyD family secretion protein -0.36
    15 PP_1770 3-phosphoshikimate 1-carboxyvinyltransferase -0.36
    16 PP_4781 Sensor histidine kinase -0.35
    17 PP_1776 Mannose-6-phosphate isomerase/mannose-1-phosphate guanylyltransferase -0.34
    18 PP_1777 phosphomannomutase -0.33
    19 PP_1656 ATP:GTP 3'-pyrophosphotransferase -0.33
    20 PP_5284 UPF0758 protein PP_5284 -0.33

    Or look for positive cofitness