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  • Negative cofitness for PP_4446 from Pseudomonas putida KT2440

    putative Group II intron-encoding maturase
    SEED: Retron-type RNA-directed DNA polymerase (EC 2.7.7.49)

    Computing cofitness values with 989 experiments...

    Genes with the strongest negative cofitness:

    Rank Hit Name Description Cofit  
    1 PP_4880 exoribonuclease R -0.28
    2 PP_4902 Oligoribonuclease -0.27
    3 PP_0355 Response regulator -0.27
    4 PP_0872 Peptide chain release factor 3 -0.26
    5 PP_4375 flagellar chaperone, inhibits premature FliC assembly -0.25
    6 PP_1527 tRNA threonylcarbamoyladenosine dehydratase (t(6)A37 dehydratase) -0.25
    7 PP_1906 ribosomal large subunit pseudouridine synthase C -0.25
    8 PP_4376 flagellar filament capping protein -0.24
    9 PP_0208 putative Nitrate ABC transporter, permease protein -0.24
    10 PP_4384 Flagellar L-ring protein -0.24
    11 PP_5502 ribosome modulation factor -0.24
    12 PP_5045 tRNA sulfurtransferase -0.24
    13 PP_4380 Flagellar hook-associated protein FlgL -0.24
    14 PP_4365 Flagellar protein FliJ -0.24
    15 PP_t11 tRNA-Lys -0.24
    16 PP_4382 Peptidoglycan hydrolase FlgJ -0.24
    17 PP_5084 penicillin-insensitive transglycosylase/penicillin-sensitive transpeptidase -0.23
    18 PP_4388 Flagellar hook protein FlgE -0.23
    19 PP_2160 NADPH-dependent 7-cyano-7-deazaguanine reductase -0.23
    20 PP_5266 putative acetyl-CoA hydrolase family protein -0.23

    Or look for positive cofitness