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  • Negative cofitness for PP_3790 from Pseudomonas putida KT2440

    diaminopimelate epimerase
    SEED: Diaminopimelate epimerase (EC 5.1.1.7)
    KEGG: diaminopimelate epimerase

    Computing cofitness values with 989 experiments...

    Genes with the strongest negative cofitness:

    Rank Hit Name Description Cofit  
    1 PP_3831 conserved protein of unknown function -0.51
    2 PP_1113 Pyridoxal-phosphate dependent enzyme family protein -0.41
    3 PP_2210 LysR family transcriptional regulator -0.40
    4 PP_0872 Peptide chain release factor 3 -0.36
    5 PP_4100 Transcriptional regulator, Cro/CI family -0.35
    6 PP_t11 tRNA-Lys -0.35
    7 PP_4542 putative ABC transporter, ATP-binding protein/permease protein -0.35
    8 PP_2889 putative Transmembrane regulator PrtR -0.34
    9 PP_2933 GSH-dependent disulfide bond oxidoreductase -0.34
    10 PP_4895 tRNA dimethylallyltransferase -0.34
    11 PP_4880 exoribonuclease R -0.33
    12 PP_5310 junction-specific ATP-dependent DNA helicase -0.33
    13 PP_1783 dTDP-glucose pyrophosphorylase -0.33
    14 PP_0994 putative RNA polymerase sigma factor -0.33
    15 PP_2387 conserved protein of unknown function -0.33
    16 PP_4171 conserved exported protein of unknown function -0.33
    17 PP_4902 Oligoribonuclease -0.32
    18 PP_2025 Exonuclease SbcD -0.31
    19 PP_1734 Probable septum site-determining protein MinC -0.30
    20 PP_3770 conserved protein of unknown function -0.30

    Or look for positive cofitness