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  • Negative cofitness for PP_3788 from Pseudomonas putida KT2440

    putative Non-ribosomal peptide synthetase
    SEED: Non-ribosomal peptide synthetase modules, pyoverdine

    Computing cofitness values with 1005 experiments...

    Genes with the strongest negative cofitness:

    Rank Hit Name Description Cofit  
    1 PP_3831 conserved protein of unknown function -0.45
    2 PP_1113 Pyridoxal-phosphate dependent enzyme family protein -0.41
    3 PP_t11 tRNA-Lys -0.38
    4 PP_2210 LysR family transcriptional regulator -0.38
    5 PP_1445 carbohydrate-selective porin -0.32
    6 PP_2889 putative Transmembrane regulator PrtR -0.31
    7 PP_4542 putative ABC transporter, ATP-binding protein/permease protein -0.30
    8 PP_0872 Peptide chain release factor 3 -0.30
    9 PP_4895 tRNA dimethylallyltransferase -0.30
    10 PP_2025 Exonuclease SbcD -0.30
    11 PP_2832 galactose-binding protein regulator -0.30
    12 PP_2387 conserved protein of unknown function -0.29
    13 PP_4171 conserved exported protein of unknown function -0.29
    14 PP_1894 glutathione S-transferase reducing arsenate to arsenite -0.28
    15 PP_0994 putative RNA polymerase sigma factor -0.28
    16 PP_4100 Transcriptional regulator, Cro/CI family -0.28
    17 PP_1504 conserved protein of unknown function -0.27
    18 PP_2933 GSH-dependent disulfide bond oxidoreductase -0.27
    19 PP_3775 putative sarcosine oxidase -0.26
    20 PP_4902 Oligoribonuclease -0.26

    Or look for positive cofitness