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  • Negative cofitness for PP_3415 from Pseudomonas putida KT2440

    Transcriptional regulator, LacI family
    SEED: Gluconate utilization system Gnt-I transcriptional repressor
    KEGG: LacI family transcriptional regulator, gluconate utilization system Gnt-I transcriptional repressor

    Computing cofitness values with 989 experiments...

    Genes with the strongest negative cofitness:

    Rank Hit Name Description Cofit  
    1 PP_3417 D-gluconate transporter -0.58
    2 PP_1016 mannose/glucose ABC transporter, permease protein -0.48
    3 PP_1655 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD -0.47
    4 PP_1014 aldose-ketose isomerase -0.46
    5 PP_1013 Sensor histidine kinase -0.46
    6 PP_1015 mannose/glucose ABC transporter, glucose-binding periplasmic protein -0.44
    7 PP_1011 glucokinase -0.43
    8 PP_1017 mannose/glucose ABC transporter, permease protein -0.41
    9 PP_1012 DNA-binding response regulator -0.39
    10 PP_3653 Transporter, LysE family -0.38
    11 PP_4547 putative Glutamine synthetase -0.38
    12 PP_1018 mannose/glucose ABC transporter - ATP binding subunit -0.38
    13 PP_0680 ATP-dependent protease-like protein -0.38
    14 PP_1656 ATP:GTP 3'-pyrophosphotransferase -0.37
    15 PP_2245 Transcriptional regulator, Cro/CI family -0.36
    16 PP_1505 Phosphoenolpyruvate carboxylase -0.35
    17 PP_1234 putative permease -0.35
    18 PP_4548 putative Oxidoreductase -0.35
    19 PP_3654 leucine-responsive regulatory protein -0.34
    20 PP_1309 conserved exported protein of unknown function -0.33

    Or look for positive cofitness