Negative cofitness for PP_3260 from Pseudomonas putida KT2440

DNA ligase D
SEED: ATP-dependent DNA ligase (EC 6.5.1.1) clustered with Ku protein, LigD
KEGG: DNA ligase (ATP)

Computing cofitness values with 989 experiments...

Genes with the strongest negative cofitness:

Rank	Hit	Name	Description	Cofit
1	PP_1937		putative helicase	-0.27
2	PP_3680		conserved protein of unknown function	-0.26
3	PP_1940		Methyl-accepting chemotaxis transducer	-0.25
4	PP_1945		methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase	-0.24
5	PP_3681		putative Helicase	-0.24
6	PP_1957		Oxidoreductase, Pdr/VanB family	-0.23
7	PP_5380		copper resistance protein A	-0.23
8	PP_1955		Cytochrome P450 family protein	-0.23
9	PP_4421		putative aminotransferase	-0.22
10	PP_1949		Oxidoreductase, GMC family	-0.21
11	PP_4463		Carbon-nitrogen hydrolase family protein	-0.21
12	PP_1932		conserved protein of unknown function	-0.20
13	PP_4032		putative Outer membrane lipoprotein Blc	-0.20
14	PP_5687		putative permease of the major facilitator superfamily	-0.20
15	PP_4742		Type I restriction-modification system, S subunit	-0.19
16	PP_3383		gluconate 2-dehydrogenase flavoprotein subunit	-0.18
17	PP_3698		conserved protein of unknown function	-0.18
18	PP_5484		protein of unknown function	-0.18
19	PP_1117		conserved protein of unknown function	-0.18
20	PP_1947		conserved protein of unknown function	-0.18

Or look for positive cofitness