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  • Negative cofitness for PP_3002 from Pseudomonas putida KT2440

    shikimate dehydrogenase-related enzyme
    SEED: Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25)
    KEGG: shikimate dehydrogenase

    Computing cofitness values with 989 experiments...

    Genes with the strongest negative cofitness:

    Rank Hit Name Description Cofit  
    1 PP_2281 putative Capsid assembly protein -0.15
    2 PP_3263 phospholipid modification enzyme -0.15
    3 PP_5378 putative metal-binding protein -0.14
    4 PP_1929 arsenite/antimonite transporter -0.14
    5 PP_2387 conserved protein of unknown function -0.13
    6 PP_4557 conserved exported protein of unknown function -0.13
    7 PP_4559 peptide deformylase -0.12
    8 PP_2075 conserved membrane protein of unknown function -0.12
    9 PP_5380 copper resistance protein A -0.11
    10 PP_3825 conserved protein of unknown function -0.11
    11 PP_1393 putative transcriptional regulator -0.11
    12 PP_0798 GGDEF domain protein -0.11
    13 PP_5194 aminomethyltransferase -0.11
    14 PP_2683 putative sensory box histidine kinase/response regulator -0.11
    15 PP_4592 putative metal dependent hydrolase -0.11
    16 PP_5473 putative transcriptional regulator, LuxR family -0.11
    17 PP_5449 conserved exported protein of unknown function -0.11
    18 PP_2416 putative Iron ABC transporter, ATP-binding protein -0.11
    19 PP_0959 phospholipid ABC transporter -0.11
    20 PP_0634 Fimbrial protein -0.11

    Or look for positive cofitness