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  • Negative cofitness for PP_1906 from Pseudomonas putida KT2440

    ribosomal large subunit pseudouridine synthase C
    SEED: Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70)
    KEGG: ribosomal large subunit pseudouridine synthase C

    Computing cofitness values with 989 experiments...

    Genes with the strongest negative cofitness:

    Rank Hit Name Description Cofit  
    1 PP_1655 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD -0.32
    2 PP_4246 Periplasmic binding protein -0.30
    3 PP_1781 putative O-acyltransferase -0.29
    4 PP_1656 ATP:GTP 3'-pyrophosphotransferase -0.29
    5 PP_0026 putative cobalt/cadmium/zinc exporter -0.29
    6 PP_4924 Serine protease, subtilase family -0.25
    7 PP_4446 putative Group II intron-encoding maturase -0.25
    8 PP_4974 NhaP-type Na+/H+ and K+/H+ antiporters -0.24
    9 PP_5406 transposase -0.24
    10 PP_5404 Transposition protein, TnsC-related protein -0.24
    11 PP_4412 conserved protein of unknown function -0.23
    12 PP_1940 Methyl-accepting chemotaxis transducer -0.23
    13 PP_0043 cation efflux system protein -0.23
    14 PP_5384 copper sensor protein -0.23
    15 PP_1072 Leucine-rich repeat domain protein -0.23
    16 PP_0787 quinolinate phosphoribosyltransferase (decarboxylating) monomer -0.23
    17 PP_4458 putative Opine ABC transporter, periplasmic binding protein -0.23
    18 PP_1953 Oxidoreductase, short chain dehydrogenase/reductase family -0.23
    19 PP_1794 conserved hypothetical protein -0.23
    20 PP_1955 Cytochrome P450 family protein -0.22

    Or look for positive cofitness