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  • Negative cofitness for PP_1611 from Pseudomonas putida KT2440

    2-dehydro-3-deoxyphosphooctonate aldolase
    SEED: 2-Keto-3-deoxy-D-manno-octulosonate-8-phosphate synthase (EC 2.5.1.55)
    KEGG: 2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase)

    Computing cofitness values with 989 experiments...

    Genes with the strongest negative cofitness:

    Rank Hit Name Description Cofit  
    1 PP_4766 ATP-dependent RNA helicase -0.21
    2 PP_2646 conserved protein of unknown function -0.20
    3 PP_2645 magnesium transporter, ATP-dependent -0.19
    4 PP_5310 junction-specific ATP-dependent DNA helicase -0.19
    5 PP_1445 carbohydrate-selective porin -0.19
    6 PP_1268 putative HtrA suppressor protein sohA -0.19
    7 PP_3528 putative ABC transporter, periplasmic substrate-binding protein -0.18
    8 PP_1719 Tail-specific protease prc -0.18
    9 PP_1908 putative Peptidase -0.17
    10 PP_0058 putative 1-acyl-sn-glycerol-3-phosphate acyltransferase -0.17
    11 PP_5311 putative signal transduction protein -0.17
    12 PP_4052 4-alpha-glucanotransferase -0.17
    13 PP_1460 putative Membrane protein -0.16
    14 PP_4230 conserved exported protein of unknown function -0.16
    15 PP_0852 Transcriptional regulator, Cro/CI family -0.16
    16 PP_3027 conserved protein of unknown function -0.16
    17 PP_4983 putative amine oxidase -0.16
    18 PP_0872 Peptide chain release factor 3 -0.16
    19 PP_2889 putative Transmembrane regulator PrtR -0.16
    20 PP_4880 exoribonuclease R -0.15

    Or look for positive cofitness