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  • Negative cofitness for PP_1234 from Pseudomonas putida KT2440

    putative permease
    SEED: Putative permease PerM (= YfgO)
    KEGG: putative permease

    Computing cofitness values with 1005 experiments...

    Genes with the strongest negative cofitness:

    Rank Hit Name Description Cofit  
    1 PP_5218 DedA family protein -0.37
    2 PP_3415 Transcriptional regulator, LacI family -0.35
    3 PP_1792 Glycosyl transferase, group 2 family protein -0.28
    4 PP_4483 histidine lysine / arginine / ornithine ABC transporter - ATP binding subunit -0.27
    5 PP_4486 lysine / arginine / ornithine ABC transporter - periplasmic binding protein -0.27
    6 PP_4484 histidine / lysine / arginine / ornithine ABC transporter - permease subunit -0.26
    7 PP_4485 histidine / lysine / arginine / ornithine ABC transporter - permease subunit -0.24
    8 PP_3246 Beta-carotene hydroxylase -0.24
    9 PP_1791 putative Aldolase/synthase -0.23
    10 PP_0218 Sensory box protein -0.22
    11 PP_1793 Glycosyl transferase, group 2 family protein -0.22
    12 PP_1059 Uncharacterized amino acid permease YtnA -0.21
    13 PP_4179 Chaperone protein HtpG -0.20
    14 PP_1145 RNA polymerase-associated protein RapA -0.20
    15 PP_4130 NADH:ubiquinone oxidoreductase, membrane subunit M -0.20
    16 PP_3722 Alanine racemase -0.20
    17 PP_2642 Transcriptional regulator, GntR family -0.19
    18 PP_5337 LysR family transcriptional regulator -0.19
    19 PP_1970 putative Lipoprotein -0.18
    20 PP_1262 LysR family transcriptional regulator -0.18

    Or look for positive cofitness