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  • Negative cofitness for PP_0547 from Pseudomonas putida KT2440

    UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase
    SEED: UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (EC 6.3.2.-)
    KEGG: UDP-N-acetylmuramate: L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase

    Computing cofitness values with 989 experiments...

    Genes with the strongest negative cofitness:

    Rank Hit Name Description Cofit  
    1 PP_1940 Methyl-accepting chemotaxis transducer -0.32
    2 PP_4246 Periplasmic binding protein -0.30
    3 PP_1797 HlyD family secretion protein -0.30
    4 PP_5060 conserved protein of unknown function -0.29
    5 PP_1279 Probable alginate O-acetylase AlgJ -0.29
    6 PP_1792 Glycosyl transferase, group 2 family protein -0.27
    7 PP_1798 Outer membrane efflux protein -0.27
    8 PP_5709 protein of unknown function -0.27
    9 PP_0016 conserved hypothetical protein -0.27
    10 PP_4954 conserved membrane protein of unknown function -0.27
    11 PP_4781 Sensor histidine kinase -0.26
    12 PP_5404 Transposition protein, TnsC-related protein -0.26
    13 PP_5741 conserved protein of unknown function -0.26
    14 PP_1627 conserved protein of unknown function -0.25
    15 PP_0014 putative transposase -0.25
    16 PP_0037 porin P -0.25
    17 PP_0115 hydroperoxidase - self catalytic heme d synthase -0.25
    18 PP_1631 conserved protein of unknown function -0.25
    19 PP_4999 dihydroorotase-like protein -0.25
    20 PP_0928 K+-dependent Na+/Ca+ exchanger related-protein -0.24

    Or look for positive cofitness