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  • Negative cofitness for GFF6984 from Variovorax sp. SCN45

    RNA polymerase sigma factor for flagellar operon
    SEED: RNA polymerase sigma factor for flagellar operon

    Computing cofitness values with 61 experiments...

    Genes with the strongest negative cofitness:

    Rank Hit Name Description Cofit  
    1 GFF3250 Barstar, ribonuclease (Barnase) inhibitor -0.59
    2 GFF1364 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) -0.59
    3 GFF5452 no description -0.58
    4 GFF2065 Peptidase, M23/M37 family -0.57
    5 GFF2422 Polysaccharide deacetylase -0.56
    6 GFF3973 FIG01198345: hypothetical protein -0.55
    7 GFF837 FIG01002808: hypothetical protein -0.55
    8 GFF4322 Acyl-CoA dehydrogenase -0.55
    9 GFF3588 ABC transporter, permease protein 2 (cluster 1, maltose/g3p/polyamine/iron) -0.54
    10 GFF1962 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27) -0.54
    11 GFF2013 Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4) -0.54
    12 GFF295 Ribonuclease G -0.53
    13 GFF1639 Polyketide synthase modules and related proteins -0.53
    14 GFF7271 Transcriptional regulator, LacI family -0.52
    15 GFF4006 DNA polymerase I (EC 2.7.7.7) -0.52
    16 GFF2477 Tripartite tricarboxylate transporter TctA family -0.52
    17 GFF2136 Ribokinase (EC 2.7.1.15) -0.52
    18 GFF2781 Phosphopantetheine-binding -0.52
    19 GFF6773 Transcriptional regulator, GntR family -0.51
    20 GFF769 Conserved TM helix -0.51

    Or look for positive cofitness