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  • Negative cofitness for GFF6660 from Variovorax sp. SCN45

    Multidrug efflux system MdtABC-TolC, membrane fusion component MdtA
    SEED: Probable Co/Zn/Cd efflux system membrane fusion protein
    KEGG: putative multidrug efflux transporter MdtA

    Computing cofitness values with 61 experiments...

    Genes with the strongest negative cofitness:

    Rank Hit Name Description Cofit  
    1 GFF1644 hypothetical protein -0.56
    2 GFF3721 Hydrolase, alpha/beta fold family -0.55
    3 GFF3414 Fumarylacetoacetase (EC 3.7.1.2) -0.52
    4 GFF7031 hypothetical protein -0.50
    5 GFF1878 Bll6165 protein -0.50
    6 GFF5911 Probable L-amino-acid oxidase (EC 1.4.3.2) -0.49
    7 GFF582 Two-component system sensor histidine kinase -0.47
    8 GFF1455 DNA polymerase II (EC 2.7.7.7) -0.46
    9 GFF1681 Methylisocitrate lyase (EC 4.1.3.30) -0.46
    10 GFF4614 Transcriptional regulator, AraC family -0.45
    11 GFF5733 Methyl-accepting chemotaxis sensor/transducer protein -0.45
    12 GFF69 Two-component transcriptional response regulator, LuxR family -0.44
    13 GFF4058 Copper/silver efflux RND transporter, outer membrane protein CusC -0.44
    14 GFF7364 no description -0.44
    15 GFF1508 ABC transporter, permease protein 2 (cluster 5, nickel/peptides/opines) -0.44
    16 GFF5965 hypothetical protein -0.43
    17 GFF4332 Aldehyde dehydrogenase (EC 1.2.1.3) -0.43
    18 GFF2728 hypothetical protein -0.43
    19 GFF3389 Glycosyl transferases, related to UDP-glucuronosyltransferase -0.43
    20 GFF12 Two-component system sensor histidine kinase -0.43

    Or look for positive cofitness