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  • Negative cofitness for GFF6112 from Variovorax sp. SCN45

    Oligopeptide ABC transporter, ATP-binding protein OppD (TC 3.A.1.5.1)
    SEED: Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1)
    KEGG: peptide/nickel transport system ATP-binding protein

    Computing cofitness values with 61 experiments...

    Genes with the strongest negative cofitness:

    Rank Hit Name Description Cofit  
    1 GFF4292 no description -0.60
    2 GFF3559 no description -0.57
    3 GFF5420 Cyclic pyranopterin monophosphate synthase (EC 4.6.1.17) -0.57
    4 GFF2697 Oxidoreductase, short-chain dehydrogenase/reductase family -0.57
    5 GFF4650 Transcriptional regulator, PadR family -0.56
    6 GFF3358 Alkanesulfonate utilization operon LysR-family regulator Cbl -0.56
    7 GFF839 Retron-type RNA-directed DNA polymerase (EC 2.7.7.49) -0.54
    8 GFF7049 hypothetical protein -0.52
    9 GFF797 no description -0.52
    10 GFF5217 Ferric iron ABC transporter, iron-binding protein -0.51
    11 GFF4218 no description -0.51
    12 GFF1305 ABC transporter, permease protein (cluster 3, basic aa/glutamine/opines) -0.51
    13 GFF4537 Tetrapartite efflux system, inner membrane component FusBC-like -0.51
    14 GFF2650 hypothetical protein -0.51
    15 GFF3266 Putative transmembrane protein -0.50
    16 GFF5700 UPF0758 family protein -0.50
    17 GFF2427 Transcriptional regulator, MarR family -0.50
    18 GFF4270 Transcriptional regulator, AcrR family -0.50
    19 GFF6011 putative decarboxylase -0.49
    20 GFF3267 RNA-binding protein -0.48

    Or look for positive cofitness