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  • Negative cofitness for GFF5806 from Variovorax sp. SCN45

    RNA polymerase ECF-type sigma factor
    SEED: RNA polymerase sigma-70 factor
    KEGG: RNA polymerase sigma-70 factor, ECF subfamily

    Computing cofitness values with 61 experiments...

    Genes with the strongest negative cofitness:

    Rank Hit Name Description Cofit  
    1 GFF2300 Cytochrome oxidase biogenesis protein Cox11-CtaG, copper delivery to Cox1 -0.57
    2 GFF2332 Transcriptional regulator, LysR family -0.57
    3 GFF648 integral membrane sensor signal transduction histidine kinase -0.56
    4 GFF1566 no description -0.55
    5 GFF4967 Glutathione S-transferase family protein -0.54
    6 GFF2304 Cytochrome oxidase biogenesis protein Surf1, facilitates heme A insertion -0.54
    7 GFF2075 BUG/TctC family periplasmic protein -0.53
    8 GFF5221 Phosphonoacetaldehyde hydrolase (EC 3.11.1.1) -0.52
    9 GFF5611 BUG/TctC family periplasmic protein -0.52
    10 GFF5265 Outer membrane lipoprotein -0.51
    11 GFF6591 Transcriptional regulator, GntR family -0.51
    12 GFF6886 DNA-binding transcriptional regulator, MocR family / aminotransferase domain -0.51
    13 GFF655 hypothetical protein -0.51
    14 GFF3103 Cys-tRNA(Pro) deacylase YbaK -0.51
    15 GFF706 hypothetical protein -0.51
    16 GFF4324 no description -0.51
    17 GFF2273 Transcriptional regulator, AcrR family -0.50
    18 GFF582 Two-component system sensor histidine kinase -0.50
    19 GFF7309 Transcriptional regulator, LysR family -0.49
    20 GFF1375 Transcriptional regulator, LysR family -0.49

    Or look for positive cofitness