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  • Negative cofitness for PS417_26870 from Pseudomonas simiae WCS417

    5-hydroxymethyluracil DNA glycosylase
    SEED: Formamidopyrimidine-DNA glycosylase (EC 3.2.2.23)
    KEGG: formamidopyrimidine-DNA glycosylase

    Computing cofitness values with 552 experiments...

    Genes with the strongest negative cofitness:

    Rank Hit Name Description Cofit  
    1 PS417_10990 TonB-dependent receptor -0.20
    2 PS417_16740 membrane protein -0.19
    3 PS417_23080 sugar ABC transporter ATPase -0.18
    4 PS417_14755 UV damage repair endonuclease UvdE -0.18
    5 PS417_26445 ArsR family transcriptional regulator -0.17
    6 PS417_18235 nitrile hydratase -0.17
    7 PS417_14410 ABC transporter substrate-binding protein -0.16
    8 PS417_27320 hemolysin secretion protein D -0.16
    9 PS417_18445 glycerol-3-phosphatase -0.16
    10 PS417_26650 histidine kinase -0.16
    11 PS417_22570 H-NS histone -0.15
    12 PS417_18435 hypothetical protein -0.15
    13 PS417_15250 DNA repair protein -0.15
    14 PS417_05460 hypothetical protein -0.15
    15 PS417_00545 hypothetical protein -0.15
    16 PS417_13840 isobutyryl-CoA dehydrogenase (EC 1.3.8.5) (from data) -0.14
    17 PS417_01250 ATP-dependent DNA helicase RecQ -0.14
    18 PS417_01230 hypothetical protein -0.14
    19 PS417_22365 serine dehydratase -0.14
    20 PS417_11900 conjugal transfer protein TraR -0.14

    Or look for positive cofitness