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  • Negative cofitness for GFF5087 from Variovorax sp. SCN45

    DNA repair protein RadA
    SEED: DNA repair protein RadA
    KEGG: DNA repair protein RadA/Sms

    Computing cofitness values with 61 experiments...

    Genes with the strongest negative cofitness:

    Rank Hit Name Description Cofit  
    1 GFF4594 Aspartate ammonia-lyase (EC 4.3.1.1) -0.60
    2 GFF1115 Putative transmembrane protein -0.57
    3 GFF864 no description -0.55
    4 GFF794 KEGG: RNA polymerase sigma-70 factor, ECF subfamily -0.55
    5 GFF1028 FIG027190: Putative transmembrane protein -0.54
    6 GFF4018 Arsenate reductase (EC 1.20.4.4) thioredoxin-coupled, LMWP family -0.54
    7 GFF4819 Hydroxymethylpyrimidine ABC transporter, transmembrane component -0.53
    8 GFF2584 Sulfate permease -0.52
    9 GFF5199 Galactofuranose ABC transporter, permease protein 2 -0.52
    10 GFF4776 Broad-specificity amino acid ABC transporter, substrate-binding protein -0.52
    11 GFF1055 Fumarylacetoacetate hydrolase family protein -0.51
    12 GFF5814 Rhodanese-related sulfurtransferase -0.50
    13 GFF420 Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) -0.50
    14 GFF3773 Fatty acid hydroxylase family (carotene hydroxylase/sterol desaturase) -0.50
    15 GFF7270 Altronate dehydratase (EC 4.2.1.7) -0.49
    16 GFF5969 Transcriptional regulator, GntR family -0.48
    17 GFF1219 SAM-dependent methyltransferase -0.48
    18 GFF5766 Chemotaxis protein CheD -0.47
    19 GFF792 putative FecR -0.47
    20 GFF1402 3-demethylubiquinone-9 3-methyltransferase -0.47

    Or look for positive cofitness