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  • Negative cofitness for GFF5052 from Variovorax sp. SCN45

    FAD-dependent oxidoreductase SPO0682
    SEED: Salicylate hydroxylase (EC 1.14.13.1)
    KEGG: 3-(3-hydroxy-phenyl)propionate hydroxylase

    Computing cofitness values with 61 experiments...

    Genes with the strongest negative cofitness:

    Rank Hit Name Description Cofit  
    1 GFF6731 Nucleoside ABC transporter, permease protein 1 -0.64
    2 GFF3825 Autolysin sensor kinase (EC 2.7.3.-) -0.61
    3 GFF1569 BUG/TctC family periplasmic protein -0.58
    4 GFF4485 FIG00715336: hypothetical protein -0.57
    5 GFF2379 Serine/threonine protein kinase -0.57
    6 GFF5320 Type IV pilus biogenesis protein PilN -0.56
    7 GFF5490 Uncharacterized protein with LysM domain, COG1652 -0.56
    8 GFF2510 Type IV fimbrial assembly, ATPase PilB -0.56
    9 GFF3826 Response regulator receiver:LytTr DNA-binding region -0.56
    10 GFF5323 Type IV pilus biogenesis protein PilQ -0.56
    11 GFF5416 Type IV fimbrial biogenesis protein PilW -0.55
    12 GFF993 Type IV pilus biogenesis protein PilF -0.55
    13 GFF2508 Leader peptidase (Prepilin peptidase) (EC 3.4.23.43) / N-methyltransferase (EC 2.1.1.-) -0.55
    14 GFF2682 Protein containing domains DUF403 -0.55
    15 GFF2154 twitching motility protein PilJ -0.55
    16 GFF5322 Type IV pilus biogenesis protein PilP -0.55
    17 GFF4432 Two-component system response regulator protein -0.55
    18 GFF5414 hypothetical protein -0.55
    19 GFF5418 Type IV fimbrial biogenesis protein PilY1 -0.54
    20 GFF2151 twitching motility protein PilG -0.54

    Or look for positive cofitness