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  • Negative cofitness for GFF4868 from Variovorax sp. SCN45

    Type IV secretory pathway, VirD2 components (relaxase)
    SEED: Type IV secretory pathway, VirD2 components (relaxase)

    Computing cofitness values with 61 experiments...

    Genes with the strongest negative cofitness:

    Rank Hit Name Description Cofit  
    1 GFF6823 BUG/TctC family periplasmic protein -0.52
    2 GFF1645 Sigma factor PvdS, controling pyoverdin biosynthesis -0.51
    3 GFF6699 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) -0.50
    4 GFF5651 hypothetical protein -0.50
    5 GFF1185 Transcriptional regulator, AraC family -0.50
    6 GFF1365 no description -0.49
    7 GFF7066 Two-component transcriptional response regulator receiver domain -0.49
    8 GFF4427 hypothetical protein -0.49
    9 GFF4463 alpha-methyl-L-serine aldolase -0.49
    10 GFF3703 LemA family protein -0.48
    11 GFF2099 Acyl-CoA dehydrogenase -0.48
    12 GFF3241 hypothetical protein -0.48
    13 GFF5623 Metal-dependent amidase/aminoacylase/carboxypeptidase -0.47
    14 GFF2944 Acetyltransferase -0.46
    15 GFF3117 Beta-phosphoglucomutase (EC 5.4.2.6) -0.46
    16 GFF7112 O-succinylbenzoic acid--CoA ligase (EC 6.2.1.26) -0.46
    17 GFF7250 Putative transposase InsK for insertion sequence element IS150 -0.46
    18 GFF4376 UPF0380 proteins YafZ and homologs -0.46
    19 GFF2640 PKHD-type hydroxylase YbiX -0.46
    20 GFF1863 Uncharacterized MFS-type transporter -0.45

    Or look for positive cofitness