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  • Negative cofitness for GFF4830 from Variovorax sp. SCN45

    Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain
    SEED: Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain

    Computing cofitness values with 61 experiments...

    Genes with the strongest negative cofitness:

    Rank Hit Name Description Cofit  
    1 GFF5235 General secretion pathway protein D / Type II secretion outermembrane pore forming protein (PulD) -0.60
    2 GFF6125 Thiosulfate sulfurtransferase, rhodanese (EC 2.8.1.1) -0.59
    3 GFF5920 no description -0.59
    4 GFF3348 Putative lipase -0.57
    5 GFF5862 KEGG: RNA polymerase sigma-70 factor, ECF subfamily -0.54
    6 GFF6171 Na(+) H(+) antiporter subunit D -0.54
    7 GFF2672 ABC transporter, ATP-binding protein -0.53
    8 GFF1073 Glutathione S-transferase (EC 2.5.1.18) -0.53
    9 GFF3216 hypothetical protein -0.53
    10 GFF6407 Phytanoyl-CoA dioxygenase -0.52
    11 GFF3441 Hypothetical protein VC0266 (sugar utilization related?) -0.51
    12 GFF5770 Flagellar biosynthesis protein FlhB -0.51
    13 GFF5709 no description -0.50
    14 GFF5103 Class II aldolase/adducin, N-terminal -0.50
    15 GFF2406 DipZ protein -0.50
    16 GFF4411 Conjugative transfer protein TrbK -0.50
    17 GFF4726 hypothetical protein -0.49
    18 GFF2201 hypothetical protein -0.49
    19 GFF7312 Phosphoglycerate mutase (EC 5.4.2.11) -0.48
    20 GFF3456 Possible regulatory protein similar to urea ABC transporter, substrate binding protein -0.48

    Or look for positive cofitness