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  • Negative cofitness for PS417_24435 from Pseudomonas simiae WCS417

    shikimate dehydrogenase
    SEED: Quinate/shikimate 5-dehydrogenase I delta (EC 1.1.1.25)
    KEGG: shikimate dehydrogenase

    Computing cofitness values with 552 experiments...

    Genes with the strongest negative cofitness:

    Rank Hit Name Description Cofit  
    1 PS417_00810 RNA polymerase sigma factor -0.24
    2 PS417_03325 acid phosphatase -0.23
    3 PS417_13415 AraC family transcriptional regulator -0.19
    4 PS417_12415 ATPase -0.18
    5 PS417_08760 metalloprotease -0.18
    6 PS417_06790 arabinose transporter permease -0.18
    7 PS417_24155 ATP-binding protein -0.18
    8 PS417_21795 ABC transporter substrate-binding protein -0.18
    9 PS417_20335 hypothetical protein -0.17
    10 PS417_08390 transcription elongation factor GreB -0.17
    11 PS417_25160 hypothetical protein -0.17
    12 PS417_04410 hypothetical protein -0.17
    13 PS417_00030 hypothetical protein -0.16
    14 PS417_25635 biotin--protein ligase -0.16
    15 PS417_12315 peptidylprolyl isomerase -0.16
    16 PS417_24715 lytic transglycosylase -0.16
    17 PS417_01890 TetR family transcriptional regulator -0.16
    18 PS417_10245 hypothetical protein -0.15
    19 PS417_25650 anhydro-N-acetylmuramic acid kinase -0.15
    20 PS417_09890 hypothetical protein -0.15

    Or look for positive cofitness