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  • Negative cofitness for GFF4716 from Variovorax sp. SCN45

    ABC transporter, substrate-binding protein (cluster 3, basic aa/glutamine/opines)
    SEED: ABC transporter substrate-binding protein

    Computing cofitness values with 61 experiments...

    Genes with the strongest negative cofitness:

    Rank Hit Name Description Cofit  
    1 GFF2127 Type II/IV secretion system secretin RcpA/CpaC, associated with Flp pilus assembly -0.65
    2 GFF595 Transcriptional regulator, LysR family -0.59
    3 GFF6903 Transcriptional regulator, LysR family -0.58
    4 GFF3772 Arginase (EC 3.5.3.1) -0.57
    5 GFF1918 hypothetical protein -0.56
    6 GFF4606 3-ketoacyl-CoA thiolase [fadN-fadA-fadE operon] (EC 2.3.1.16) -0.56
    7 GFF1512 no description -0.55
    8 GFF4991 Polyhydroxyalkanoate granule-associated protein PhaF -0.54
    9 GFF7251 Mobile element protein -0.54
    10 GFF1051 no description -0.53
    11 GFF3524 Possible NADH oxidoreductase -0.53
    12 GFF4166 Cytidine deaminase (EC 3.5.4.5) -0.52
    13 GFF958 ElaB protein -0.51
    14 GFF1092 Phosphate ABC transporter, substrate-binding protein PstS (TC 3.A.1.7.1) -0.51
    15 GFF1309 Phosphoglucomutase (EC 5.4.2.2) -0.51
    16 GFF4429 Inner membrane protein YpjD -0.50
    17 GFF2363 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase (EC 4.1.2.52) -0.50
    18 GFF5187 Aldose 1-epimerase (EC 5.1.3.3) -0.50
    19 GFF5400 Demethylmenaquinone methyltransferase-like protein -0.50
    20 GFF4121 no description -0.50

    Or look for positive cofitness