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  • Negative cofitness for GFF4463 from Variovorax sp. SCN45

    alpha-methyl-L-serine aldolase
    SEED: Serine hydroxymethyltransferase (EC 2.1.2.1)
    KEGG: glycine hydroxymethyltransferase

    Computing cofitness values with 61 experiments...

    Genes with the strongest negative cofitness:

    Rank Hit Name Description Cofit  
    1 GFF4563 Ferredoxin, 2Fe-2S -0.56
    2 GFF1354 FMN-dependent NADH-azoreductase (EC 1.7.1.6) -0.54
    3 GFF4926 Probable carboxyvinyl-carboxyphosphonate phosphorylmutase (EC 2.7.8.23) -0.51
    4 GFF3571 hypothetical protein -0.49
    5 GFF6453 Gluconate 2-dehydrogenase (EC 1.1.99.3), membrane-bound, flavoprotein -0.49
    6 GFF4259 Transcriptional regulator, DeoR family -0.49
    7 GFF4868 Type IV secretory pathway, VirD2 components (relaxase) -0.49
    8 GFF2070 D-aminoacyl-tRNA deacylase (EC 3.1.1.96) -0.48
    9 GFF6818 hypothetical protein -0.47
    10 GFF7378 protein of unknown function DUF1311 -0.47
    11 GFF1909 FIG00537389: hypothetical protein -0.47
    12 GFF5284 RNA polymerase ECF-type sigma factor -0.46
    13 GFF479 Fumarate hydratase class II (EC 4.2.1.2) -0.46
    14 GFF4645 GGDEF domain protein -0.46
    15 GFF199 Ortho-halobenzoate 1,2-dioxygenase beta-ISP protein OhbA -0.46
    16 GFF6927 Transcriptional regulator, ArsR family -0.46
    17 GFF5821 no description -0.46
    18 GFF3777 Prolyl endopeptidase (EC 3.4.21.26) -0.46
    19 GFF5733 Methyl-accepting chemotaxis sensor/transducer protein -0.45
    20 GFF803 MutT/Nudix family protein -0.45

    Or look for positive cofitness